📚 node [[newick format|newick format]]
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⥅ related node [[newick format]]
⥅ node [[newick-format]] pulled by Agora
📓 garden/flancian/newick format.md by @flancian

newick format
📓 garden/s5bug/newick-format.md by @s5bug

Newick Format

  • Format to represent trees with distances and branch names

Examples

Printed using DendroPY options show_internal_node_labels = True, width=40, plot_metric="length".

Single Descendant

(B)A;

A- B

Two Descendants

(B,C)A;

/- B
A
\- C

Two Levels Of Descendants

((D,E)B,(F,G)C)A;

                   / D
/B
|                  \ E
A
|                  / F
\C
                   \ G

Distances

(A:1,B:2);

/ A
@
\- B

Big Example

(
    (
        (
            (
                Dasyatis_laosensis:0.00864712,
                Hemitrygon_akajei:0.02501331
            ):0.00555551,
            Dasyatis_sp._TT:0.01190329
        ):0.07844344,
        Maculabatis_gerrardi:0.10443933
    ):0.03362855,
    (
        Aetobatus_flagellum:0.06712780,
        (
            Aetobatus_narinari:0.00190402,
            Aetobatus_ocellatus:0.00159879
        ):0.05608476
    ):0.06364667,
    Squatina_squatina:0.24404039
);

         /Dasyatis laosensis
        /@
  /-----@\- Hemitrygon akajei
  |     |
/-@     \ Dasyatis sp. TT
| |
| \- Maculabatis gerrardi
|
|   /----- Aetobatus flagellum
@---@
|   |    /Aetobatus narinari
|   \----@
|        \Aetobatus ocellatus
|
\ Squatina squatina
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